I don't see any quotes where he said that, but I'll accept that that's what he said.
When Pres. Bush said, ""In a world where some invoke the name of God to justify acts of terror and murder and hate..." he obviously wasn't referring to himself, but he could have.
As for the 200 protesters (against the Catholic Church for instances of pedophilia), what do you suppose they want? An inquisition? To abolish the church?